Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs148158907 chr8:135504274 G/GT 0.000236 173 20.2 25.6 28.95 KM Plot
PCPG rs148214594 chr2:24322341 G/A 0.000122 175 25.4 27.52 17.43 KM Plot
PCPG rs148222551 chr2:242518759 AAAAG/A 4.19E-11 178 25.87 24.85 10.3 KM Plot
PCPG rs148465642 chr9:36133777 AT/A 0 170 25.53 30.67 2.93 KM Plot
PCPG rs148518934 chr2:118573983 TTTTTA/T 1.92E-5 176 25.17 25.97 11.65 KM Plot
PCPG rs148605139 chr12:56684657 CA/C 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs148716715 chr21:38483354 G/A 1.07E-8 174 25.35 25.63 3.83 KM Plot
PCPG rs148722891 chr7:105154771 G/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs148804868 chr16:89817203 C/CA 0.000183 175 26.57 20.17 36.37 KM Plot
PCPG rs148874097 chr12:56747744 C/T 9.85E-8 177 25.35 27.33 9.98 KM Plot
PCPG rs148917111 chr13:37626679 AC/A 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs148961925 chr2:118549549 TTTTC/T 1.73E-5 177 25 34.35 11.65 KM Plot
PCPG rs149024843 chr2:24321673 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs149120386 chr3:195732463 C/G 1.24E-5 177 24.52 31.47 13.38 KM Plot
PCPG rs149125341 chr7:1105893 G/GACGATC 0.000262 173 25.87 24.95 49.58 KM Plot